Refereed Journal Articles (Selected)

  1. Behzadi, M. M., & Ilieş, H. T. (2023). Taming Connectedness in Machine-Learning-based Topology Optimization with Connectivity Graphs  . To Appear in Computer-Aided Design.
  2. Chorsi, M. T., Le, T. T., Lin, F., Vinikoor, T., Das, R., Stevens, J. F., Mundrane, C., Park, J., Tran, K. T. M., Liu, Y., & others. (2023). Highly piezoelectric, biodegradable, and flexible amino acid nanofibers for medical applications. Science Advances, 9(24), eadg6075.
  3. Peddada, S. R. T., Zeidner, L. E., Ilies, H. T., James, K. A., & Allison, J. T. (2022). Toward Holistic Design of Spatial Packaging of Interconnected Systems With Physical Interactions (SPI2). Journal of Mechanical Design, 144(12), 120801. https://doi.org/10.1115/1.4055055
  4. Chen, J., Ilies, H. T., & Ding, C. (2022). Graph-Based Shape Analysis for Heterogeneous Geometric Datasets: Similarity, Retrieval and Substructure Matching. Computer-Aided Design, 143, 103125. https://www.sciencedirect.com/science/article/pii/S0010448521001366
  5. Madani, M., Behzadi, M. M., Song, D., Ilies, H. T., & Tarakanova, A. (2022). Improved inter-residue contact prediction via a hybrid generative model and dynamic loss function. Computational and Structural Biotechnology Journal, 20, 6138–6148.
  6. Behzadi, M. M., & Ilieş, H. T. (2022). GANTL: Toward practical and real-time topology optimization with conditional generative adversarial networks and transfer learning. Journal of Mechanical Design, 144(2), 021711.
  7. Chorsi, M. T., Tavousi, P., Mundrane, C., Gorbatyuk, V., Kazerounian, K., & Ilies, H. (2021). Kinematic Design of Functional Nanoscale Mechanisms From Molecular Primitives. Journal of Micro and Nano-Manufacturing, 9(2), 021005. https://doi.org/10.1115/1.4051472
  8. Huber, M., Eschbach, M., Kazerounian, K., & Ilies, H. (2021). Functional Evaluation of a Personalized Orthosis for Knee Osteoarthritis: A Motion Capture Analysis. Journal of Medical Devices, 15(4), 041003. https://doi.org/10.1115/1.4051626
  9. Behzadi, M. M., & Ilieş, H. T. (2021). Real-Time Topology Optimization in 3D via Deep Transfer Learning. Computer-Aided Design, 135, 103014. https://www.sciencedirect.com/science/article/pii/S0010448521000257
  10. Chen, J., & Ilieş, H. T. (2020). Maximal Disjoint Ball Decompositions for shape modeling and analysis. Computer-Aided Design, 126, 102850. https://www.sciencedirect.com/science/article/pii/S0010448520300439
  11. Chorsi, M. T., Curry, E. J., Chorsi, H. T., Das, R., Baroody, J., Purohit, P. K., Ilies, H., & Nguyen, T. D. (2019). Piezoelectric Biomaterials for Sensors and Actuators. Advanced Materials, 31(1), 1802084. https://onlinelibrary.wiley.com/doi/abs/10.1002/adma.201802084
  12. Curry, E. J., Ke, K., Chorsi, M. T., Wrobel, K. S., Miller III, A. N., Patel, A., Kim, I., Feng, J., Yue, L., Wu, Q., & others. (2018). Biodegradable piezoelectric force sensor. Proceedings of the National Academy of Sciences, 115(5), 909–914.
  13. Williams, R. M., & Ilieş, H. T. (2018). Practical shape analysis and segmentation methods for point cloud models. Computer Aided Geometric Design, 67, 97–120. https://www.sciencedirect.com/science/article/pii/S0167839618301213
  14. Corcodel, R. I., & Ilies, H. T. (2018). Printability analysis in additive manufacturing. Computer-Aided Design and Applications, 15(3), 318–329.
  15. Behandish, M., & Ilies, H. T. (2017). Shape complementarity analysis for objects of arbitrary shape. ArXiv Preprint ArXiv:1712.00238.
  16. Williams, R. M., & Ilieş, H. T. (2017). Adaptive eigensystem truncation for spectral shape signatures. Computer-Aided Design and Applications, 14(6), 770–777.
  17. Zhao, X., & Ilieş, H. T. (2017). Learned 3D shape descriptors for classifying 3D point cloud models. Computer-Aided Design and Applications, 14(4), 507–515.
  18. Behandish, M., & Ilies, H. T. (2017). Haptic Assembly and Prototyping: An Expository Review. ArXiv Preprint ArXiv:1712.00750.
  19. Behandish, M., & Ilieş, H. T. (2016). Analytic methods for geometric modeling via spherical decomposition. Computer-Aided Design, 70, 100–115. SPM 2015. https://www.sciencedirect.com/science/article/pii/S0010448515000962
  20. Behandish, M., & Ilieş, H. T. (2016). Haptic assembly using skeletal densities and Fourier transforms. Journal of Computing and Information Science in Engineering, 16(2), 021002.
  21. Behandish, M., & Ilieş, H. T. (2015). Peg-in-hole revisited: A generic force model for haptic assembly. Journal of Computing and Information Science in Engineering, 15(4), 041004.
  22. Ragsdell, K., Papalambros, P., Mistree, F., Williams, C., Rai, R., Panchal, J., Ferguson, S., DuPont, B., Allison, J., Ilies, H., & others. (2015). New Perspectives on Design Automation: Celebrating the 40th anniversary of the ASME Design Automation Conference. Journal of Mechanical Design, Transactions of the ASME, 137(5), 050301.
  23. Tavousi, P., Behandish, M., Ilieş, H. T., & Kazerounian, K. (2015). Protofold II: Enhanced model and implementation for kinetostatic protein folding. Journal of Nanotechnology in Engineering and Medicine, 6(3), 034601.
  24. Flanagan, D., Ilies, H., O’brien, B., McManus, A., & Larrow, B. (2012). Jaw bite force measurement device. Journal of Oral Implantology, 38(4), 361–364.
  25. Eftekharian, A. A., & Ilieş, H. T. (2012). Medial Zones: Formulation and Applications. Computer-Aided Design, 44(5), 413–423. https://www.sciencedirect.com/science/article/pii/S0010448511003198
  26. Periverzov, F., & Ilieş, H. T. (2012). 3D Imaging for hand gesture recognition: Exploring the software-hardware interaction of current technologies. 3D Research, 3(3), 1–15.
  27. Eftekharian, A. a., & Ilieş, H. t. (2011). A Family of Skeletons for Motion Planning and Geometric Reasoning Applications. Artif. Intell. Eng. Des. Anal. Manuf., 25(4), 375–392. https://doi.org/10.1017/S0890060411000229
  28. Eftekharian, A. A., & Ilies, H. T. (2011). Curve Skeletons of Planar Domains. Computer-Aided Design and Applications, 8(1), 87–97.
  29. Wu, N., & Ilies, H. T. (2011). Shaping with deformations. Computer-Aided Design and Applications, 8(2), 249–268.
  30. Shahbazi, Z., Ilieş, H. T., & Kazerounian, K. (2010). Hydrogen Bonds and Kinematic Mobility of Protein Molecules. Journal of Mechanisms and Robotics, 2(2), 021009. https://doi.org/10.1115/1.4001088
  31. Erdim, H., & Ilieş, H. T. (2010). A comparison of sampling strategies for computing general sweeps. Computer-Aided Design, 42(8), 657–669. Application-driven Shape Development. https://www.sciencedirect.com/science/article/pii/S0010448509001717
  32. Frank, M., & ILIEŞ, H. O. R. E. A. T. (2010). Fast Hierarchical Discretization of Parametric Boundary Representations. International Journal of Shape Modeling, 16(01n02), 57–79.
  33. Ilieş, H. T. (2009). Continuous Collision and Interference Detection for 3D Geometric Models. Journal of Computing and Information Science in Engineering, 9(2), 021007. https://doi.org/10.1115/1.3130142
  34. Flanagan, D., Ilies, H., Lasko, B., & Stack, J. (2009). Force and movement of non-osseointegrated implants: an in vitro study. Journal of Oral Implantology, 35(6), 270–276.
  35. Madden, C., Bohnenkamp, P., Kazerounian, K., & Ilieş, H. T. (2009). Residue level three-dimensional workspace maps for conformational trajectory planning of proteins. The International Journal of Robotics Research, 28(4), 450–463.
  36. Eftekharian, A. A., & Ilieş, H. T. (2009). Distance functions and skeletal representations of rigid and non-rigid planar shapes. Computer-Aided Design, 41(12), 865–876. https://www.sciencedirect.com/science/article/pii/S0010448509001699
  37. Ilieş, H. T., Flanagan, D., Raby, M., & Stevenson, R. (2008). Measuring Luxation of Dental Implants In Vitro. Journal of Medical Devices, 2(1), 014501. https://doi.org/10.1115/1.2889057
  38. Ilieş, H. T., Flanagan, D., McCullough, P. T., & McQuoid, S. (2008). Determining the Fatigue Life of Dental Implants. Journal of Medical Devices, 2(1), 011003. https://doi.org/10.1115/1.2889058
  39. Erdim, H., & Ilieş, H. T. (2008). Classifying points for sweeping solids. Computer-Aided Design, 40(9), 987–998. https://www.sciencedirect.com/science/article/pii/S0010448508001310
  40. Flanagan, D., Ilies, H., McCullough, P., & McQuoid, S. (2008). Measurement of the fatigue life of mini dental implants: a pilot study. Journal of Oral Implantology, 34(1), 7–11.
  41. Flanagan, D., Ilies, H., Raby, M., & Stevenson, R. (2008). Force required to luxate a newly placed dental implant in bone: an in vitro pilot study. Journal of Oral Implantology, 34(3), 128–134.
  42. Bohnenkamp, P., Kazerounian, K., & Ilies, H. T. (2007). Structural prediction of peptide based Nano systems via progressive landscape evolution. Proc 12th IFToMM World Congr, 1(6).
  43. Erdim, H., & Ilieş, H. T. (2007). Detecting and quantifying envelope singularities in the plane. Computer-Aided Design, 39(10), 829–840. https://www.sciencedirect.com/science/article/pii/S0010448507000802
  44. Ilies¸, H. T., & Shapiro, V. (2004). Equivalence Classes for Shape Synthesis of Moving Mechanical Parts . Journal of Computing and Information Science in Engineering, 4(1), 20–27. https://doi.org/10.1115/1.1641794
  45. Ilieş, H., & Shapiro, V. (2002). A class of forms from function: the case of parts moving in contact. Research in Engineering Design, 13, 157–166.
  46. Ilies¸, H. T., & Shapiro, V. (1999). On Shaping With Motion . Journal of Mechanical Design, 122(4), 567–574. https://doi.org/10.1115/1.1319319
  47. Ilies, H. T., & Shapiro, V. (1999). The dual of sweep. Computer-Aided Design, 31(3), 185–201. https://www.sciencedirect.com/science/article/pii/S0010448599000159
  48. Ostoja-Starzewski, M., & Ilies, H. (1996). The Cauchy and characteristic boundary value problems of random rigid-perfectly plastic media. International Journal of Solids and Structures, 33(8), 1119–1136. https://www.sciencedirect.com/science/article/pii/0020768395000720

Refereed Book Chapters

  1. Chorsi, M. T., Le, T. T., Das, R., Vinikoor, T., Chorsi, H. T., Kazerounian, K., Ilies, H., & Nguyen, T. D. (2023). Materials for Biocompatible Piezoelectric Devices. In A. S. M. A. Haseeb (Ed.), Encyclopedia of Materials: Electronics (pp. 180–198). Academic Press. https://www.sciencedirect.com/science/article/pii/B9780128197288001005
  2. Mundrane, C., Chorsi, M., Vinogradova, O., Ilies, H., & Kazerounian, K. (2022). Exploring Electric Field Perturbations as the Actuator for Nanorobots and Nanomachines. In O. Altuzarra & A. Kecskeméthy (Eds.), Advances in Robot Kinematics 2022 (pp. 257–265). Springer International Publishing.
  3. Chorsi, M. T., Tavousi, P., Mundrane, C., Gorbatyuk, V., Ilies, H., & Kazerounian, K. (2021). One Degree of Freedom 7-R Closed Loop Linkage as a Building Block of Nanorobots. In J. Lenarčič & B. Siciliano (Eds.), Advances in Robot Kinematics 2020 (pp. 41–48). Springer International Publishing.
  4. Huber, M., Eschbach, M., Ilies, H., & Kazerounian, K. (2015). Novel Quasi-Passive Knee Orthosis with Hybrid Joint Mechanism. In A. Kecskeméthy & F. Geu Flores (Eds.), Interdisciplinary Applications of Kinematics (pp. 53–61). Springer International Publishing.
  5. Cassidy, H. P., Peters, T. J., Ilies, H., & Jordan, K. E. (2014). Topological Integrity for Dynamic Spline Models During Visualization of Big Data. In P.-T. Bremer, I. Hotz, V. Pascucci, & R. Peikert (Eds.), Topological Methods in Data Analysis and Visualization III (pp. 167–183). Springer International Publishing.
  6. Kazerounian, K., & Ilieş, H. T. (2013). Protein molecules: evolution’s design for kinematic machines. In 21st Century Kinematics: The 2012 NSF Workshop (pp. 217–244). Springer London.
  7. Madden, C., Bohnenkamp, P., Kazerounian, K., & Ilieş, H. T. (2011). Predicting Protein Conformational Transitions by Trajectory Planning Through Torsion Angle Propensity Maps. In A. Kecskeméthy, V. Potkonjak, & A. Müller (Eds.), Interdisciplinary Applications of Kinematics (pp. 135–149). Springer Netherlands.
  8. Shahbazi, Z., Pimentel, T. A. P. F., Ilies, H., Kazerounian, K., & Burkhard, P. (2010). A Kinematic Observation and Conjecture for Creating Stable Constructs of a Peptide Nanoparticle. In J. Lenarcic & M. M. Stanisic (Eds.), Advances in Robot Kinematics: Motion in Man and Machine (pp. 203–210). Springer Netherlands.

Refereed Conference Proceedings (Selected)

  1. Behzadi, M. M., & Ilies, H. (2023). On the Connectedness of the Topology Optimization Predictors. ASME IDETC & CIE.
  2. Behandish, M., & Ilieş, H. T. (2015). Haptic assembly using skeletal densities and Fourier transforms. International Design Engineering Technical Conferences and Computers and Information in Engineering Conference, 57052, V01BT02A060.
  3. Periverzov, F., & Ilieş, H. (2015). IDS: The intent driven selection method for natural user interfaces. 2015 IEEE Symposium on 3D User Interfaces (3DUI), 121–128.
  4. Eschbach, M., Huber, M., Ilies, H., & Kazerounian, K. (2014). Customizable Joint Mechanism for Knee Orthosis. International Design Engineering Technical Conferences and Computers and Information in Engineering Conference, 46360, V05AT08A019.
  5. Behandish, M., Tavousi, P., Ilieş, H. T., & Kazerounian, K. (2013). GPU-accelerated computation of solvation free energy for kinetostatic protein folding simulation. International Design Engineering Technical Conferences and Computers and Information in Engineering Conference, 55850, V02AT02A009.
  6. Tavousi, P., Behandish, M., Kazerounian, K., & Ilieş, H. T. (2013). An improved free energy formulation and implementation for kinetostatic protein folding simulation. International Design Engineering Technical Conferences and Computers and Information in Engineering Conference, 55935, V06AT07A006.
  7. Williams, R. M., & Ilies, H. T. (2012). Towards multi-scale heat kernel signatures for point cloud models of engineering artifacts. Workshop on Algebraic Topology and Machine Learning at Neural Information Processing Symposium, 2012.
  8. Shahbazi, Z., Ilies\c, H. T., & Kazerounian, K. (2011). Kinematic motion constraints of the protein molecule chains. International Design Engineering Technical Conferences and Computers and Information in Engineering Conference, 54839, 535–542.
  9. Eftekharian, A. A., & Ilies\c, H. T. (2011). Shape and topology optimization with medial zones. International Design Engineering Technical Conferences and Computers and Information in Engineering Conference, 54822, 687–696.
  10. Erdim, H. seyin, & Ilies, H. T. (2008). Contact analysis between a moving solid and the boundary of its swept volume. International Design Engineering Technical Conferences and Computers and Information in Engineering Conference, 43253, 637–645.
  11. Ilies, H., & Shapiro, V. (2003). On the synthesis of functionally equivalent mechanical designs. 2003 AAAI Spring Symposium on Computational Synthesis, 24–26.
  12. Ilies, H. T., & Shapiro, V. (1997). An Approach to Systematic Part Design. In M. J. Pratt, R. D. Sriram, & M. J. Wozny (Eds.), Product Modeling for Computer Integrated Design and Manufacture: TC5/WG5.2 International Workshop on Geometric Modeling in Computer Aided Design 19–23 May 1996, Airlie, Virginia, USA (pp. 17–31). Springer US. https://doi.org/10.1007/978-0-387-35187-2_2
  13. Ilies, H. T., & Shapiro, V. (1997). UNSWEEP: Formulation and computational properties. Proceedings of the Fourth ACM Symposium on Solid Modeling and Applications, 155–167.

Patents

  1. Ilies, H., & Corcodel, R. I. (2019). Apparatus and computational modeling for non-planar 3D printing. US Patent App. 16/280,445.
  2. Kazerounian, K., Huber, M., Ilies, H., & Eschbach, M. (2015). Knee Orthosis Device and Associated Methods. US Patent App. 14/319,149.
  3. Ilies, H. T. (2014). Geometric singularity detection. US Patent 8,849,617.
  4. Ilies, H., & Eftekharian, A. A. (2012). Method and system for constructing geometric skeletons and medial zones of rigid and non-rigid shapes. US Patent App. 13/172,824.
  5. Rankin, I. I. J., Stewart, P., Buttolo, P., Marsan, A., & Ilies, H. (2006). Handheld switch measurement system. Google Patents; US Patent 7,141,963.
  6. Shapiro, V., & Ilies, H. T. (2000). Methods and apparatus for shaping moving geometric shapes. US Patent 6,044,306.

PhD Thesis

  1. Ilies, H. T. (2000). On Shaping Moving Mechanical Parts, University of Wisconsin, Madison, June 2000 [PhD thesis]. University of Wisconsin, Madison.